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the Node
thenode.biologists.com > bytes-dont-lie-how-a-hidden-space-broke-my-single-cell-pipeline > resources

Bytes don't lie: How a hidden space broke my single-cell pipeline

1+ day, 5+ hour ago   (558+ words) Posted by Anjaney Pandey, on 3 September 2026 Today I will share the story of how a single, invisible character derailed my pipeline, how standard data cleaning tools missed it, and how looking at raw machine bytes finally solved the mystery. I…...

the Node
thenode.biologists.com > show-and-tell-start-exploring-single-cell-data > video

Show and Tell: Start Exploring Single-cell Data

5+ day, 3+ hour ago   (187+ words) Posted by Julia Ibe, on 31 August 2026 Bioinformatics can seem intimidating, especially when you’re just starting out. But you don’t need to be an expert to begin exploring single-cell RNA-seq data. In this short tutorial, I walk through a simple four-step…...

the Node
thenode.biologists.com > unboxing-data > research

Unboxing data

4+ mon, 1+ week ago   (331+ words) Thanks to community campaigns (#barbarplots) and opinionated papers (Drummond & Vowler, 2011; Weisgerber et al 2015) the dynamite plunger plot (a bar plot together with an error bar) has been abandoned as the default graph. The main reason to reject bar plots is…...

the Node
thenode.biologists.com > from-fate-to-form-the-journey-to-whole-embryo-spatial-transcriptomics > research

From fate to form: the journey to whole-embryo spatial transcriptomics

5+ mon, 3+ day ago   (215+ words) Posted by Yinan Wan, on 2 April 2026 In the end, making this work required combining several key improvements, each addressing a different limitation of the system: • Stability during long-term imaging • Seeing deeper without losing signal Imaging deep tissues introduced another challenge....

the Node
thenode.biologists.com > meeting-report-joint-international-gfe-dsdb-sebd-meeting-gfe-2026 > meeting-reports

Meeting report: Joint international GfE/DSDB/SEBD Meeting (GfE 2026)

5+ mon, 1+ week ago   (1040+ words) Recently, I attended the biennial meeting of the German Society for Developmental Biology (GfE). This was my second time attending one of these meetings, and I was looking forward to it, having missed the last one a couple of years…...

the Node
thenode.biologists.com > self-assessing-your-progress-as-a-developing-scientist > uncategorized

Self assessing your progress as a developing scientist

6+ mon, 3+ week ago   (137+ words) As scientists, we are all are works in progress and continually developing in our own ways. Each of us brings unique strengths and skills along with challenges, and these can change during the course of our careers. Still, there are…...

the Node
thenode.biologists.com > catch-up-on-development-presents-webinar-on-the-environment-and-evolution > development-presents

Catch up on Development presents… webinar on the environment and evolution

7+ mon, 1+ week ago   (102+ words) Our January webinar featured two early-career researchers working on development, evolution and the environment. Here, we share the talks from Chee Kiang (Ethan) Ewe (Tel Aviv University) and Max Farnworth (University of Bristol). The post Catch up on Development presents…...

thenode.biologists.com
thenode.biologists.com > https-www-youtube-com-watchvu63oyfwdbomt4180s > education

AlphaFold protein interaction modeling tutorial and workshop

7+ mon, 4+ week ago   (148+ words) This video is the culmination of several years attempting to: (1) Figure out best practices for modeling protein-protein interactions; (2) Understand the outputs of programs like AlphaFold and adjacent software including quantitative metrics; and (3) Communicate my thoughts to unwitting victims through workshops....